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    Length: 06:29
03 Apr 2020

Due to the scarcity in the availability of large amount of labeled samples, training a deep learning model is becoming a very challenging task in computational pathology. In this paper, we show a solution for automatically generating labeled samples using classical image processing methods and exploring the generalization power of a DL approach for region segmentation. A Recurrent Residual U-Net (R2U-Net) model is trained on the labeled samples generated by employing Blue Ratio (BR) estimate along with an adaptive thresholding approach and verified by an expert pathologist. Testing of the system is performed on a set of completely new samples collected from a different Whole Slide Image (WSI). The R2U-Net shows significantly better performance compared to the BR with adaptive thresholding method alone, which proves the generalizability and robustness of DL methods for segmentation tasks in computational pathology.

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